PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5165.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 310aa    MW: 34172.3 Da    PI: 6.9187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5165.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49101471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrF P+deelv++yL+ kv++++l+   +  + evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ + s  
  MLOC_5165.1  10 LPPGFRFYPSDEELVCHYLHGKVANQRLPGGAAgtMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKATGKDRVIRSPr 107
                  79*************************76643334***************87788999*************************************996 PP

          NAM  96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + + vg++ktLvfy+grap+g+kt Wvmhe+r+
  MLOC_5165.1 108 ssssrpgRAAIVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 147
                  55555444444***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-597166IPR003441NAC domain
PROSITE profilePS5100556.03810166IPR003441NAC domain
PfamPF023651.9E-2711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRLPGG AAGTMVEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SRPGRAAIVG  120
MRKTLVFYRG RAPNGSKTCW VMHEFRIENP HSPPKEDWVL CRVFHKKKAD TEYAMDGEQE  180
IVGGMARSAA VVSGSNYVSS SSCHDPDQYH HSPAAALFPP LGAGGHHYQL TSCDNHHPLG  240
TAGVSLSDVD AFAGMPQLLN YDSIVDFSQQ LQGGGAAAGL RDGAGDQCGG PLMDLGLEVQ  300
EEHYNYNSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-4711694168NO APICAL MERISTEM PROTEIN
1ut4_B7e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_A7e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_B7e-4711694168NO APICAL MERISTEM PROTEIN
3ulx_A7e-4711671169Stress-induced transcription factor NAC1
4dul_A7e-4711694168NAC domain-containing protein 19
4dul_B7e-4711694168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572924.11e-157PREDICTED: NAC domain-containing protein 92
SwissprotQ9FLJ21e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLF2DJD40.0F2DJD4_HORVD; Predicted protein
STRINGMLOC_5165.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-74NAC domain containing protein 74